\author{Niklas Semmler 6191177}
\title{Emergent networks: A slime mold simulation}
\documentclass[11pt]{article}
\usepackage{graphicx, amsmath, amssymb, mathrsfs, url, setspace}
\usepackage{times}
\usepackage{tkz-graph}
\DeclareMathAlphabet{\mathpzc}{OT1}{pzc}{m}{it}
\begin{document}
    \input{./tex/title.tex}
    \input{./tex/abstract.tex}
    \input{./tex/introduction.tex}
    \input{./tex/slime_mold.tex}
    \input{./tex/framework.tex}
    \input{./tex/model.tex}
    \input{./tex/result.tex}
    \input{./tex/discussion.tex}
    \input{./tex/conclusion.tex}
    
    \section{Acknowledgements}
    I would like to thank Peter Sloot for his guidance and trust on this project. Also I want to thank Jeff Jones for his quick response and information over the details of his algorithm.
    
    \bibliography{ref}
    \bibliographystyle{plain}
    \clearpage
    \begin{appendix}
        \section{Pictures}
        \begin{figure}[h!t]
            \includegraphics[scale=0.5]{pics/cellsort2.jpg}
            \caption{Cellsorting by low-level interaction, a demonstration from the CompuCell3D environment.}
            \label{fig: cellsort}
        \end{figure}
        \begin{figure}
            \includegraphics[scale=0.3]{pics/fourFS.jpg}
            \caption{The slime mold on a map with four foodsources with and without sources of repulsion. The five pictures correspond to 1,2500,5000,7500 and 10000 MCS respectively. The grid size is $100 \times 100$ pixel.}
            \label{fig: fourFS}
        \end{figure}
        \begin{figure}
            \includegraphics[scale=0.3]{pics/threeFS.jpg}
            \caption{The mold with three foodsources arranged in a cycle starting either in the middle or at the side at 1 and 10000 MCS respectively. The grid size is $100 \times 100$ pixel.}
            \label{fig: threeFS}
        \end{figure}
        \begin{figure}
            \includegraphics[scale=0.4]{pics/simulation.jpg}
            \caption{The three layers of a simulation: the cellular automaton and the attractive and repulsive field respectively. The grid size is $200 \times 256$ pixel for the x and y dimension respectively.}
            \label{fig: mold1}
        \end{figure}
        \begin{figure}
            \includegraphics[scale=0.4]{pics/mold.jpg}
            \caption{The latest configuration of the mold with an path added and an earlier configuration.}
            \label{fig: mold2}
        \end{figure}
        \begin{figure}
            \includegraphics[scale=0.5]{pics/newnodes.jpg}
            \caption{An graph transformation of the mold done with GIMP.}
            \label{fig: mold3}
        \end{figure}
        \input{tex/mst.tex}
        \input{tex/mold_graph.tex}
    \end{appendix}
\end{document}
